PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G056300.3
Common NameB456_011G056300, LOC105776485
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 391aa    MW: 43735.3 Da    PI: 4.5771
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G056300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-19120169255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Gorai.011G056300.3 120 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 169
                         69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.092120177IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-32120178IPR001471AP2/ERF domain
CDDcd000186.85E-33120178No hitNo description
SuperFamilySSF541714.64E-22120178IPR016177DNA-binding domain
SMARTSM003805.2E-38120183IPR001471AP2/ERF domain
PRINTSPR003671.2E-11121132IPR001471AP2/ERF domain
PfamPF008478.9E-12121169IPR001471AP2/ERF domain
PRINTSPR003671.2E-11143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MCGGAIISDF IPPSRSRRLT ADFLWPDLKK SGLKKGSGKR YSKPVIDLGD DFETDFQEFK  60
DEESDIDDYD VDDVLADVKP FAFNARTKPA SAVSHGSNSE KSMQFDGQAE KCGKRKRKNQ  120
YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEEAARAY DAEARRIRGK KAKVNFPNET  180
PRTSPKHAVK TNSQKPLSKS NLSPVQPNLN QNYNYLNQPE QEYFDTMGFV EEKPSVNQFA  240
YVDPVPMSID AGFNQSDNAP LYFNSDQGSN SINCSDYGWG EQGAKTPEIS SILEASVEGD  300
EFLEDANPSK KLKPSSDNVM PAEDNSAKTL SDELLALDNQ MKYFQMPPFI EGNWDATIDA  360
FLNGDATQDG GNPMDLWNFD DFPTMEEGVF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21120177260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.25960.0flower|seedling| flowering
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487455470.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7811170.0AY781117.2 Gossypium hirsutum ethylene-responsive element binding protein ERF2 mRNA, complete cds.
GenBankKP7802000.0KP780200.1 Gossypium hirsutum C-repeat binding factor 17 (CBF17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012454606.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
RefseqXP_012454607.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like
SwissprotQ9SSA82e-92RA212_ARATH; Ethylene-responsive transcription factor RAP2-12
TrEMBLA0A0D2UN110.0A0A0D2UN11_G
STRINGVIT_09s0002g00470.t011e-147(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.22e-84related to AP2 12
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]